{ "_id": "6a1017f8acfb0bcc41c85322", "Package": "deltapif", "Title": "Estimate Potential Impact and Population Attributable Fractions\nwith Aggregated Data", "Version": "0.4.6", "Authors@R": "person(\"Rodrigo\", \"Zepeda-Tello\", , \"rzepeda17@gmail.com\", role = c(\"aut\", \"cre\"))", "Description": "Uses the delta-method to estimate the Potential Impact\nFraction (PIF) and the Population Attributable Fraction (PAF)\nfrom summary data. It creates point-estimates, confidence\nintervals, and estimates of the variance. Provides an extension\nto the aggregated data method in Chan, Zepeda-Tello et al\n(2025) .", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "URL": "https://rodrigozepeda.github.io/deltapif/", "VignetteBuilder": "knitr", "LazyData": "true", "Config/testthat/edition": "3", "Config/testthat/parallel": "false", "Repository": "https://rodrigozepeda.r-universe.dev", "Date/Publication": "2026-03-11 18:09:08 UTC", "RemoteUrl": "https://github.com/rodrigozepeda/deltapif", "RemoteRef": "HEAD", "RemoteSha": "ebe1cab40ea08f9bc69665c4f4413ccb16854e64", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-14 05:13:05 UTC", "User": "root" }, "Author": "Rodrigo Zepeda-Tello [aut, cre]", "Maintainer": "Rodrigo Zepeda-Tello ", "MD5sum": "0bd88a024d8e58611696985f5a80d40f", "_user": "rodrigozepeda", "_type": "src", "_file": "deltapif_0.4.6.tar.gz", "_fileid": "29d4dea186502003e9e1501bbeabddf616a3bf0de877d46ac01e12251d61c9ac", "_filesize": 404724, "_sha256": "29d4dea186502003e9e1501bbeabddf616a3bf0de877d46ac01e12251d61c9ac", "_created": "2026-05-14T05:13:05.000Z", "_published": "2026-05-22T08:46:48.545Z", "_distro": "noble", "_jobs": [ { "job": 77346428338, "time": 156, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6987652610" }, { "job": 77346428621, "time": 142, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6987651292" }, { "job": 77346428346, "time": 143, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7010745527" }, { "job": 77346428238, "time": 179, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6987750631" }, { "job": 77346428248, "time": 146, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6987623615" }, { "job": 77346427996, "time": 109, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7156481660" }, { "job": 77346428336, "time": 139, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6987649304" }, { "job": 77346429049, "time": 124, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6987646286" }, { "job": 77346428540, "time": 99, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6987641911" } ], "_buildurl": "https://github.com/r-universe/rodrigozepeda/actions/runs/25789821868", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/rodrigozepeda/deltapif", "_commit": { "id": "ebe1cab40ea08f9bc69665c4f4413ccb16854e64", "author": "Rodrigo Zepeda-Tello ", "committer": "Rodrigo Zepeda-Tello ", "message": "Bump to 0.4.6; fix sd printing; add paper\n\nBump package version to 0.4.6 and update NEWS. Fix a bug in R/02-generics.R where the printed standard deviation for attributable/averted cases was incorrectly multiplied by 100 (removed the *100). Add a new paper (Rmd, html, pdf) and bibliography under paper/, add ^paper$ to .Rbuildignore, and update vignettes/Examples.Rmd.\n", "time": 1773252548 }, "_maintainer": { "name": "Rodrigo Zepeda-Tello", "email": "rzepeda17@gmail.com", "login": "rodrigozepeda", "twitter": "@RodZepeda", "uuid": 13838319 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5", "role": "Depends" }, { "package": "cli", "role": "Imports" }, { "package": "Deriv", "role": "Imports" }, { "package": "S7", "role": "Imports" }, { "package": "scales", "role": "Imports" }, { "package": "EValue", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "rodrigozepeda", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-32", "n": 9 }, { "week": "2025-33", "n": 20 }, { "week": "2025-34", "n": 6 }, { "week": "2025-35", "n": 3 }, { "week": 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12, "table": true, "tojson": true }, { "name": "dementiarisk", "title": "Exposure and Relative Risk data from Lee et Al", "object": "dementiarisk", "class": [ "data.frame" ], "fields": [ "risk_factor", "RR", "lower_CI", "upper_CI", "logrr", "sdlog", "total", "hispanic", "asian", "black", "white" ], "rows": 12, "table": true, "tojson": true } ], "_help": [ { "page": "alcohol", "title": "Alcohol consumption in Australia from Pandeya et al", "topics": [ "alcohol" ] }, { "page": "as_covstr", "title": "Transform into a covariance structure", "topics": [ "as_covariance_structure", "as_covstr" ] }, { "page": "as.data.frame", "title": "Transform an object into a data.frame", "topics": [ "as.data.frame" ] }, { "page": "as.list", "title": "Convert to list", "topics": [ "as.list" ] }, { "page": "as.matrix", "title": "Convert a 'covariance_structure' to 'matrix'", "topics": [ "as.matrix" ] }, { "page": "cancer_rr", "title": "Relative risks for cancer from Pandeya et al", "topics": [ "cancer_rr" ] }, { "page": "casecalc", "title": "Attributable cases", "topics": [ "attributable_cases", "averted_cases", "casecalc" ] }, { "page": "change_link", "title": "Change the link", "topics": [ "change_link" ] }, { "page": "children", "title": "Get the children labels from a 'pif_class'", "topics": [ "children" ] }, { "page": "coef", "title": "Extract coefficients of a pif object", "topics": [ "coef" ] }, { "page": "confint", "title": "Extract confidence intervals", "topics": [ "confint" ] }, { "page": "covariance_structure_class", "title": "Covariance structure class", "topics": [ "covariance_structure_class" ] }, { "page": "covariance_structures", "title": "Default covariance structures", "topics": [ "covariance_structure", "covariance_structure2", "covariance_structures", "default_parameter_covariance_structure", "default_parameter_covariance_structure2", "default_pif_covariance_structure", "default_pif_covariance_structure2", "default_weight_covariance_structure", 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"names", "title": "Get the label of a PIF or PAF", "topics": [ "names" ] }, { "page": "pifpaf", "title": "Potential Impact fraction and Population Attributable Fraction", "topics": [ "paf", "pif", "pifpaf" ] }, { "page": "print", "title": "Print or show a potential impact fraction", "topics": [ "print" ] }, { "page": "rowcol", "title": "Row and Column names", "topics": [ "col_names", "rowcol", "row_names" ] }, { "page": "subset", "title": "Subset a 'covariance_structure'", "topics": [ "subset" ] }, { "page": "summary", "title": "Summary of an object", "topics": [ "summary" ] }, { "page": "totalpifpaf", "title": "Combine Potential Impact Fractions and Population Attributable Fractions", "topics": [ "paf_ensemble", "paf_total", "pif_ensemble", "pif_total", "totalpifpaf" ] }, { "page": "weighted_adjusted", "title": "Weighted Adjusted Fractions", "topics": [ "weighted_adjusted", "weighted_adjusted_paf", "weighted_adjusted_pif" ] }, { "page": "weights", "title": "Extract weights of a 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