Package: diseasenowcasting
Title: Nowcast Time Series of Epidemiological Cases
Version: 2.4.0
Authors@R: 
    c(person("Rodrigo", "Zepeda-Tello", role = c("aut", "cre"),
             email = "rzepeda17@gmail.com",
             comment = c(ORCID = "0000-0003-4471-5270")),
      person("Rami", "Yaari", role = "aut",
             comment = c(ORCID = "0000-0002-8808-8937")),
      person("Matteo", "Perini", role = "aut",
             comment = c(ORCID = "0000-0002-9465-6216")),
      person("Tal", "Robin", role = "ctb",
             comment = c(ORCID = "0000-0002-3128-2499")),
      person("Teresa", "Yamana", role = "ctb",
             comment = c(ORCID = "0000-0001-8349-3151")),
      person("Jeffrey", "Shaman", role = "ctb"),
      person(given = "Columbia University in the City of New York",
             role = c("cph", "fnd")))
Description: Implements Bayesian nowcasting models for incident disease
        cases using a censored point-process approach. The reporting
        delay is modelled directly as a stochastic process, jointly
        with the epidemic dynamics, via a censored likelihood.
        Inference uses RTMB (CppAD autodiff + Laplace approximation).
        Supports arbitrary epidemic models (including HSGP, AR1, SIR),
        arbitrary delay families (including LogNormal, GenGamma,
        Dirichlet), stratified data, extreme-delay detection, and
        backtesting.
License: MIT + file LICENSE
URL: https://rodrigozepeda.github.io/diseasenowcasting/,
        https://github.com/RodrigoZepeda/diseasenowcasting
BugReports: https://github.com/RodrigoZepeda/diseasenowcasting/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.2.0), tbl.now (>= 0.35.3)
Imports: cli, dplyr, ggplot2, lifecycle, Matrix, methods, rlang, RTMB,
        RTMBdist, S7, scoringutils, stats, utils
Suggests: future, generics, withr, testthat (>= 3.0.0), knitr,
        rmarkdown, scales, covr, patchwork, pkgdown, almanac, RTMBode
Additional_repositories: https://kaskr.r-universe.dev,
        https://davisvaughan.r-universe.dev,
        https://rodrigozepeda.r-universe.dev
VignetteBuilder: knitr
Config/testthat/edition: 3
LazyData: true
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libicu-dev
Repository: https://rodrigozepeda.r-universe.dev
Date/Publication: 2026-09-09 18:55:43 UTC
RemoteUrl: https://github.com/rodrigozepeda/diseasenowcasting
RemoteRef: HEAD
RemoteSha: d90a3e36af7340c056f83e461c6147eb304077d5
NeedsCompilation: no
Packaged: 2026-10-16 08:53:25 UTC; root
Author: Rodrigo Zepeda-Tello [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4471-5270>),
  Rami Yaari [aut] (ORCID: <https://orcid.org/0000-0002-8808-8937>),
  Matteo Perini [aut] (ORCID: <https://orcid.org/0000-0002-9465-6216>),
  Tal Robin [ctb] (ORCID: <https://orcid.org/0000-0002-3128-2499>),
  Teresa Yamana [ctb] (ORCID: <https://orcid.org/0000-0001-8349-3151>),
  Jeffrey Shaman [ctb],
  Columbia University in the City of New York [cph, fnd]
Maintainer: Rodrigo Zepeda-Tello <rzepeda17@gmail.com>